STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
matr3Matrin 3-like 1.1. (1133 aa)    
Predicted Functional Partners:
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.707
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 
 0.705
LOC103364541
Heterogeneous nuclear ribonucleoprotein K, like.
   
 
 0.705
LOC103362703
TAR DNA binding protein.
   
 
 0.690
tardbp
TAR DNA binding protein, like.
   
 
 0.690
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 0.661
ilf2
Interleukin enhancer binding factor 2.
   
 
 0.645
ubqln4
Ubiquilin 4.
    
 0.635
nono
Non-POU domain containing, octamer-binding.
   
 
 0.634
PTK7
Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.617
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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