STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103365712FYVE and coiled-coil domain containing 1a. (1512 aa)    
Predicted Functional Partners:
LOC103366613
Uncharacterized protein.
    
 0.934
LOC103359881
RAB7a, member RAS oncogene family.
    
 0.934
LOC103365899
Si:dkey-13a21.4.
     
 0.902
ENSSPAP00000021695
FYVE and coiled-coil domain containing 1b.
  
  
 
0.867
ENSSPAP00000021679
GOLD domain-containing protein.
  
  
 
0.864
MAP1LC3B
Microtubule-associated protein 1 light chain 3 beta.
   
 
 0.729
map1lc3a
Microtubule-associated protein 1 light chain 3 alpha.
   
 
 0.729
armc5
Armadillo repeat containing 5.
     
 0.627
micu2
Mitochondrial calcium uptake 2.
   
 0.597
micu1
Mitochondrial calcium uptake 1.
   
 0.597
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.