STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103357865Uncharacterized protein. (452 aa)    
Predicted Functional Partners:
fus
FUS RNA binding protein.
  
  
 
0.900
LOC103362703
TAR DNA binding protein.
   
 0.811
tardbp
TAR DNA binding protein, like.
   
 0.811
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.792
LOC103364541
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.792
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
  0.771
taf13
TATA-box binding protein associated factor 13.
   
 0.758
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.757
hnrnpu
Heterogeneous nuclear ribonucleoprotein Ub.
   
 0.749
HNRNPUL1
Heterogeneous nuclear ribonucleoprotein U like 1.
   
 0.749
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.