STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103374203Ig-like domain-containing protein; Belongs to the MHC class I family. (283 aa)    
Predicted Functional Partners:
LOC103355116
Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.
   
 0.918
LOC103356677
Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.
   
 0.916
LOC103356410
CD8a molecule.
   
 0.868
tapbp
TAP binding protein (tapasin), tandem duplicate 2.
  
 
  0.835
rpa2
Replication protein A2.
   
 0.832
ENSSPAP00000024898
Uncharacterized protein.
   
 0.832
LOC103370401
Calreticulin.
   
 
 0.822
LOC103353071
Calreticulin 3b.
   
 
  0.816
calr3
Calreticulin.
   
 
  0.808
ENSSPAP00000011915
Ig-like domain-containing protein; Belongs to the MHC class I family.
  
 
0.775
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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