STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rabep2Rabaptin, RAB GTPase binding effector protein 2. (457 aa)    
Predicted Functional Partners:
rabgef1
Uncharacterized protein.
   
 0.999
LOC103366651
Uncharacterized protein.
   
 0.999
LOC103357827
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
 0.999
zfand4
Zinc finger, AN1-type domain 4.
    
 0.882
ankrd27
Ankyrin repeat domain 27 (VPS9 domain).
    
 0.880
gapvd1
GTPase activating protein and VPS9 domains 1.
    
 0.880
LOC103369625
Uncharacterized protein.
    
 0.838
LOC103355945
Uncharacterized protein.
    
 0.838
GGA1
Golgi associated, gamma adaptin ear containing, ARF binding protein 1.
    
 0.838
LOC103358789
Zgc:77486.
    
 0.829
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.