STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103365098Smith-Magenis syndrome chromosome region, candidate 8b. (905 aa)    
Predicted Functional Partners:
c9orf72
Zgc:100846.
    
 0.989
wdr41
WD repeat domain 41.
    
 0.989
ulk1
Unc-51 like autophagy activating kinase 1.
    
 0.933
LOC103353645
Unc-51 like autophagy activating kinase 1a.
    
 0.933
ENSSPAP00000005790
Protein kinase domain-containing protein.
   
 0.932
ulk2
Unc-51 like autophagy activating kinase 2.
    
 0.930
RAB8A
RAB8A, member RAS oncogene family.
    
 0.921
LOC103355771
Uncharacterized protein.
    
 0.911
LOC103363630
RAB42, member RAS oncogene family a.
    
 0.911
ENSSPAP00000000091
TRAF family member-associated NFKB activator.
     
 0.906
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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