LOC103356774 protein (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103356774

Sorting nexin 4. (438 aa)

Predicted Functional Partners:

gak

0.983

snx30

0.964

snx7

0.964

LOC103361951

0.899

vps35

0.869

vps29

0.854

snx6

0.847

snx5

0.844

LOC103376583

0.792

vps26a

0.705

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103356774	LOC103361951	ENSSPAP00000015179	ENSSPAP00000004208	Sorting nexin 4.	PX domain-containing protein.	0.899
LOC103356774	LOC103376583	ENSSPAP00000015179	ENSSPAP00000001616	Sorting nexin 4.	Si:dkey-28n18.9.	0.792
LOC103356774	gak	ENSSPAP00000015179	ENSSPAP00000016802	Sorting nexin 4.	Cyclin G associated kinase.	0.983
LOC103356774	snx30	ENSSPAP00000015179	ENSSPAP00000014199	Sorting nexin 4.	Sorting nexin family member 30.	0.964
LOC103356774	snx5	ENSSPAP00000015179	ENSSPAP00000014869	Sorting nexin 4.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.844
LOC103356774	snx6	ENSSPAP00000015179	ENSSPAP00000006046	Sorting nexin 4.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.847
LOC103356774	snx7	ENSSPAP00000015179	ENSSPAP00000020418	Sorting nexin 4.	Sorting nexin 7.	0.964
LOC103356774	vps26a	ENSSPAP00000015179	ENSSPAP00000016934	Sorting nexin 4.	VPS26, retromer complex component A.	0.705
LOC103356774	vps29	ENSSPAP00000015179	ENSSPAP00000023288	Sorting nexin 4.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.854
LOC103356774	vps35	ENSSPAP00000015179	ENSSPAP00000016535	Sorting nexin 4.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.869
LOC103361951	LOC103356774	ENSSPAP00000004208	ENSSPAP00000015179	PX domain-containing protein.	Sorting nexin 4.	0.899
LOC103361951	LOC103376583	ENSSPAP00000004208	ENSSPAP00000001616	PX domain-containing protein.	Si:dkey-28n18.9.	0.792
LOC103361951	gak	ENSSPAP00000004208	ENSSPAP00000016802	PX domain-containing protein.	Cyclin G associated kinase.	0.983
LOC103361951	snx30	ENSSPAP00000004208	ENSSPAP00000014199	PX domain-containing protein.	Sorting nexin family member 30.	0.961
LOC103361951	snx5	ENSSPAP00000004208	ENSSPAP00000014869	PX domain-containing protein.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.844
LOC103361951	snx6	ENSSPAP00000004208	ENSSPAP00000006046	PX domain-containing protein.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.847
LOC103361951	snx7	ENSSPAP00000004208	ENSSPAP00000020418	PX domain-containing protein.	Sorting nexin 7.	0.965
LOC103361951	vps26a	ENSSPAP00000004208	ENSSPAP00000016934	PX domain-containing protein.	VPS26, retromer complex component A.	0.705
LOC103361951	vps29	ENSSPAP00000004208	ENSSPAP00000023288	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.854
LOC103361951	vps35	ENSSPAP00000004208	ENSSPAP00000016535	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.869