STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtcaRNA 3'-terminal phosphate cyclase. (366 aa)    
Predicted Functional Partners:
utp18
Uncharacterized protein.
   
 0.993
utp4
UTP4 small subunit processome component.
   
 0.991
wdr43
WD repeat domain 43.
   
 0.989
nol6
Nucleolar protein 6.
   
 0.988
utp15
UTP15 small subunit processome component.
   
 0.988
wdr75
WD repeat domain 75.
   
 0.987
LOC103365965
PWP2 small subunit processome component.
   
 
 0.987
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.986
utp6
UTP6 small subunit processome component.
   
 
 0.984
imp4
IMP U3 small nucleolar ribonucleoprotein 4.
   
 
 0.984
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.