STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmnaLamin A; Belongs to the intermediate filament family. (660 aa)    
Predicted Functional Partners:
casp6
Caspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
   
 0.930
banf1
Barrier to autointegration factor 1.
   
 0.918
LOC103371257
Granzyme 3, tandem duplicate 4; Belongs to the peptidase S1 family.
    
 0.906
LOC103369387
Emerin (Emery-Dreifuss muscular dystrophy).
    
 0.849
lmnb2
Lamin B2; Belongs to the intermediate filament family.
  
  
0.844
ENSSPAP00000002652
Uncharacterized protein; Belongs to the intermediate filament family.
  
  
 
0.833
lmnb1
Lamin B1; Belongs to the intermediate filament family.
     
0.816
lemd3
LEM domain containing 3.
    
 0.814
LOC103361921
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.776
ENSSPAP00000024174
Peptidase S1 domain-containing protein.
    
 0.776
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.