STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103369650Deltex 4, E3 ubiquitin ligase a. (595 aa)    
Predicted Functional Partners:
LOC103354216
Notch receptor 2.
    
 0.865
LOC103358203
Notch receptor 3.
    
 0.860
LOC103353434
Notch receptor 1b.
    
 0.800
LOC103357999
Notch receptor 1a.
    
 0.800
rps27a
Ribosomal protein S27a.
    
  0.733
UBB
Ubiquitin B.
    
 0.706
LOC103366646
Uncharacterized protein.
    
 0.683
LOC103352826
Uncharacterized protein.
    
 0.683
ENSSPAP00000006513
HECT domain-containing protein.
    
 0.683
wwp2
E3 ubiquitin-protein ligase.
    
 0.683
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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