STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hacl12-hydroxyacyl-CoA lyase 1; Belongs to the TPP enzyme family. (568 aa)    
Predicted Functional Partners:
pex5l
Peroxisomal biogenesis factor 5-like a.
 
  
 0.977
pex5
Peroxisomal biogenesis factor 5.
 
  
 0.976
LOC103363216
Malate synthase-like.
  
 
 0.969
bcat1
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 0.935
LOC103368192
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 0.935
bckdha
2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
  
 
 0.919
hmgcll1
3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1.
  
 
 0.918
hmgcl
3-hydroxy-3-methylglutaryl-CoA lyase.
  
 
 0.918
cs
Citrate synthase; Belongs to the citrate synthase family.
    
 0.918
adhfe1
Alcohol dehydrogenase iron containing 1.
    
 0.916
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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