STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sypl1Synaptophysin-like 1. (239 aa)    
Predicted Functional Partners:
nans
N-acetylneuraminic acid synthase a.
     
 0.642
gne
Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.
     
 0.632
LOC103367795
Vesicle-associated membrane protein 2.
   
 0.628
ENSSPAP00000018630
Vesicle-associated membrane protein 1.
   
 0.628
LOC103365278
Zgc:92912.
   
 0.628
VAMP3
Vesicle associated membrane protein 3.
   
 0.589
LOC103359002
V-SNARE coiled-coil homology domain-containing protein.
   
 0.547
LOC103359003
V-SNARE coiled-coil homology domain-containing protein.
   
 0.547
vamp4
Vesicle-associated membrane protein 4.
   
 0.547
LOC103371557
Vesicle-associated membrane protein 8 (endobrevin).
   
 0.547
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.