STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rufy2RUN and FYVE domain containing 2. (701 aa)    
Predicted Functional Partners:
WDFY4
WDFY family member 4.
   
 
 0.838
uvrag
UV radiation resistance associated gene.
    
 0.822
LOC103365700
RUN and FYVE domain containing 1.
  
 
  
0.757
rab4a
RAB4a, member RAS oncogene family.
    
  0.601
rab4b
RAB4B, member RAS oncogene family.
    
  0.601
rab33a
RAB33A, member RAS oncogene family.
    
 
 0.581
pbld
Phenazine biosynthesis like protein domain containing.
 
    
 0.540
plekhm1
Pleckstrin homology domain containing, family M (with RUN domain) member 1.
     
 0.521
LOC103374652
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
     
 0.500
VPS45
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
     
 0.500
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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