oxa1l protein (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

oxa1l

OXA1L mitochondrial inner membrane protein. (500 aa)

Predicted Functional Partners:

LOC103375513

0.937

LOC103358725

0.937

mrpl58

0.933

mrpl4

0.932

mrpl12

0.929

mrpl2

0.928

srp54

0.923

MRPL49

0.922

mrpl17

0.922

mrpl13

0.922

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103358725	mrpl12	ENSSPAP00000026197	ENSSPAP00000014122	Plug_translocon domain-containing protein.	Mitochondrial ribosomal protein L12.	0.929
LOC103358725	mrpl13	ENSSPAP00000026197	ENSSPAP00000017333	Plug_translocon domain-containing protein.	Mitochondrial ribosomal protein L13.	0.988
LOC103358725	mrpl17	ENSSPAP00000026197	ENSSPAP00000000548	Plug_translocon domain-containing protein.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.982
LOC103358725	mrpl2	ENSSPAP00000026197	ENSSPAP00000008655	Plug_translocon domain-containing protein.	Mitochondrial ribosomal protein L2.	0.988
LOC103358725	mrpl4	ENSSPAP00000026197	ENSSPAP00000013343	Plug_translocon domain-containing protein.	Mitochondrial ribosomal protein L4.	0.981
LOC103358725	mrpl58	ENSSPAP00000026197	ENSSPAP00000014995	Plug_translocon domain-containing protein.	Mitochondrial ribosomal protein L58.	0.611
LOC103358725	oxa1l	ENSSPAP00000026197	ENSSPAP00000017682	Plug_translocon domain-containing protein.	OXA1L mitochondrial inner membrane protein.	0.937
LOC103358725	srp54	ENSSPAP00000026197	ENSSPAP00000003112	Plug_translocon domain-containing protein.	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.976
LOC103375513	mrpl12	ENSSPAP00000021264	ENSSPAP00000014122	Plug_translocon domain-containing protein.	Mitochondrial ribosomal protein L12.	0.929
LOC103375513	mrpl13	ENSSPAP00000021264	ENSSPAP00000017333	Plug_translocon domain-containing protein.	Mitochondrial ribosomal protein L13.	0.988
LOC103375513	mrpl17	ENSSPAP00000021264	ENSSPAP00000000548	Plug_translocon domain-containing protein.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.982
LOC103375513	mrpl2	ENSSPAP00000021264	ENSSPAP00000008655	Plug_translocon domain-containing protein.	Mitochondrial ribosomal protein L2.	0.988
LOC103375513	mrpl4	ENSSPAP00000021264	ENSSPAP00000013343	Plug_translocon domain-containing protein.	Mitochondrial ribosomal protein L4.	0.981
LOC103375513	mrpl58	ENSSPAP00000021264	ENSSPAP00000014995	Plug_translocon domain-containing protein.	Mitochondrial ribosomal protein L58.	0.611
LOC103375513	oxa1l	ENSSPAP00000021264	ENSSPAP00000017682	Plug_translocon domain-containing protein.	OXA1L mitochondrial inner membrane protein.	0.937
LOC103375513	srp54	ENSSPAP00000021264	ENSSPAP00000003112	Plug_translocon domain-containing protein.	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.976
MRPL49	mrpl12	ENSSPAP00000000357	ENSSPAP00000014122	Mitochondrial ribosomal protein L49.	Mitochondrial ribosomal protein L12.	0.988
MRPL49	mrpl13	ENSSPAP00000000357	ENSSPAP00000017333	Mitochondrial ribosomal protein L49.	Mitochondrial ribosomal protein L13.	0.991
MRPL49	mrpl17	ENSSPAP00000000357	ENSSPAP00000000548	Mitochondrial ribosomal protein L49.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.993
MRPL49	mrpl2	ENSSPAP00000000357	ENSSPAP00000008655	Mitochondrial ribosomal protein L49.	Mitochondrial ribosomal protein L2.	0.956