STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dqx1DEAQ box RNA-dependent ATPase 1. (769 aa)    
Predicted Functional Partners:
utp3
UTP3 small subunit processome component.
   
 0.979
tfip11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
   
 0.966
ENSSPAP00000004405
Small nuclear ribonucleoprotein polypeptide F.
   
 0.948
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.943
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.942
ENSSPAP00000007914
Small nuclear ribonucleoprotein Sm D3.
   
 0.941
ENSSPAP00000010909
Small nuclear ribonucleoprotein polypeptide G.
   
 0.932
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.927
pdcd11
Programmed cell death 11.
  
 0.925
UTP14C
UTP14C small subunit processome component.
   
 0.924
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.