ccnb1ip1 protein (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ccnb1ip1

Cyclin B1 interacting protein 1. (253 aa)

Predicted Functional Partners:

LOC103368048

0.579

LOC103359841

0.579

msh4

0.558

mlh3

0.525

mlh1

0.525

mus81

0.523

tex11

0.499

msh2

0.487

prim2

0.485

hfm1

0.449

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103359841	LOC103368048	ENSSPAP00000029830	ENSSPAP00000022419	Helicase C-terminal domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.999
LOC103359841	ccnb1ip1	ENSSPAP00000029830	ENSSPAP00000017818	Helicase C-terminal domain-containing protein.	Cyclin B1 interacting protein 1.	0.579
LOC103359841	hfm1	ENSSPAP00000029830	ENSSPAP00000001497	Helicase C-terminal domain-containing protein.	Helicase for meiosis 1.	0.541
LOC103359841	mlh1	ENSSPAP00000029830	ENSSPAP00000029134	Helicase C-terminal domain-containing protein.	MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli).	0.670
LOC103359841	mlh3	ENSSPAP00000029830	ENSSPAP00000012548	Helicase C-terminal domain-containing protein.	MutL homolog 3 (E. coli).	0.659
LOC103359841	msh2	ENSSPAP00000029830	ENSSPAP00000024760	Helicase C-terminal domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.905
LOC103359841	msh4	ENSSPAP00000029830	ENSSPAP00000014407	Helicase C-terminal domain-containing protein.	MutS homolog 4.	0.904
LOC103359841	mus81	ENSSPAP00000029830	ENSSPAP00000018204	Helicase C-terminal domain-containing protein.	MUS81 structure-specific endonuclease subunit.	0.999
LOC103359841	tex11	ENSSPAP00000029830	ENSSPAP00000008198	Helicase C-terminal domain-containing protein.	Testis expressed 11.	0.578
LOC103368048	LOC103359841	ENSSPAP00000022419	ENSSPAP00000029830	Helicase ATP-binding domain-containing protein.	Helicase C-terminal domain-containing protein.	0.999
LOC103368048	ccnb1ip1	ENSSPAP00000022419	ENSSPAP00000017818	Helicase ATP-binding domain-containing protein.	Cyclin B1 interacting protein 1.	0.579
LOC103368048	hfm1	ENSSPAP00000022419	ENSSPAP00000001497	Helicase ATP-binding domain-containing protein.	Helicase for meiosis 1.	0.541
LOC103368048	mlh1	ENSSPAP00000022419	ENSSPAP00000029134	Helicase ATP-binding domain-containing protein.	MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli).	0.670
LOC103368048	mlh3	ENSSPAP00000022419	ENSSPAP00000012548	Helicase ATP-binding domain-containing protein.	MutL homolog 3 (E. coli).	0.659
LOC103368048	msh2	ENSSPAP00000022419	ENSSPAP00000024760	Helicase ATP-binding domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.905
LOC103368048	msh4	ENSSPAP00000022419	ENSSPAP00000014407	Helicase ATP-binding domain-containing protein.	MutS homolog 4.	0.904
LOC103368048	mus81	ENSSPAP00000022419	ENSSPAP00000018204	Helicase ATP-binding domain-containing protein.	MUS81 structure-specific endonuclease subunit.	0.999
LOC103368048	tex11	ENSSPAP00000022419	ENSSPAP00000008198	Helicase ATP-binding domain-containing protein.	Testis expressed 11.	0.578
ccnb1ip1	LOC103359841	ENSSPAP00000017818	ENSSPAP00000029830	Cyclin B1 interacting protein 1.	Helicase C-terminal domain-containing protein.	0.579
ccnb1ip1	LOC103368048	ENSSPAP00000017818	ENSSPAP00000022419	Cyclin B1 interacting protein 1.	Helicase ATP-binding domain-containing protein.	0.579