STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSPAP00000018044Collagen IV NC1 domain-containing protein. (547 aa)    
Predicted Functional Partners:
cd44
CD44 molecule (Indian blood group) b.
    
 0.905
LOC103364929
Integrin beta; Belongs to the integrin beta chain family.
    
 0.736
LOC103366491
Integrin beta; Belongs to the integrin beta chain family.
    
 0.736
ENSSPAP00000024618
Integrin beta; Belongs to the integrin beta chain family.
    
 0.736
itgb4
Integrin beta.
   
 0.735
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.734
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.734
LOC103365304
Integrin beta; Belongs to the integrin beta chain family.
    
 0.734
LOC103365860
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
    
 0.714
LOC103372955
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
    
 0.704
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.