STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103361834WD_REPEATS_REGION domain-containing protein. (456 aa)    
Predicted Functional Partners:
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 0.990
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.988
LOC103374601
RAB33B, member RAS oncogene family a.
    
 0.986
atg3
Autophagy-related protein 3.
   
 0.985
wipi2
WD repeat domain, phosphoinositide interacting 2.
   
 0.967
rb1cc1
RB1-inducible coiled-coil 1.
   
 0.966
ENSSPAP00000012921
WD repeat domain, phosphoinositide interacting 1.
   
 0.957
WIPI1
WD repeat domain, phosphoinositide interacting 1.
   
 0.957
LOC103357227
Zgc:101559.
    
 0.945
nod1
Nucleotide-binding oligomerization domain containing 1.
    
 0.905
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.