STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrnp25Small nuclear ribonucleoprotein 25. (181 aa)    
Predicted Functional Partners:
snrnp48
Small nuclear ribonucleoprotein 48 (U11/U12).
     
 0.900
ENSSPAP00000010779
Small nuclear ribonucleoprotein 35 (U11/U12).
    
 0.860
snrnp70
Small nuclear ribonucleoprotein 70 (U1).
    
 0.860
PDCD7
Programmed cell death 7.
     
 0.849
ENSSPAP00000004405
Small nuclear ribonucleoprotein polypeptide F.
   
 0.773
LOC103363947
Serine/arginine repetitive matrix 2.
     
 0.751
nhp2
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
    0.744
ENSSPAP00000007914
Small nuclear ribonucleoprotein Sm D3.
   
 
 0.716
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.715
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
     
 0.684
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.