STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103360126Uncharacterized protein; Belongs to the DEAD box helicase family. (489 aa)    
Predicted Functional Partners:
lsm1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
   
 0.976
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.973
ENSSPAP00000019704
Decapping mRNA 2.
  
 0.969
ENSSPAP00000011494
Uncharacterized protein.
   
 0.967
dcp1a
Decapping mRNA 1A.
   
 0.964
patl1
PAT1 homolog 1, processing body mRNA decay factor.
   
 0.959
patl2
PAT1 homolog 2.
   
 0.959
LOC103375937
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
  
 0.958
edc3
Enhancer of mRNA decapping 3.
  
 0.958
cnot1
CCR4-NOT transcription complex, subunit 1.
   
 0.955
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.