STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103356839Chromodomain helicase DNA binding protein 4a. (1792 aa)    
Predicted Functional Partners:
LOC103366349
Retinoblastoma binding protein 4, like.
   
 0.817
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
 0.817
LOC103357053
RB binding protein 4, chromatin remodeling factor.
   
 0.817
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.800
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.800
mta2
Metastasis associated 1 family, member 2.
   
 0.798
mta1
Metastasis associated 1.
   
 0.794
LOC103373628
MBD domain-containing protein.
    
 0.794
LOC103354193
Methyl-CpG binding domain protein 3a.
    
 0.794
mta3
Metastasis associated 1 family, member 3.
   
 0.794
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.