STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCLOPiccolo presynaptic cytomatrix protein. (5116 aa)    
Predicted Functional Partners:
ak9
Adenylate kinase 9.
    
  0.870
UNC79
Unc-79 homolog, NALCN channel complex subunit.
   
 0.864
LOC103372825
Zgc:171558.
    
 0.660
rapgef4
Rap guanine nucleotide exchange factor (GEF) 4.
    
 0.660
LOC103372267
Uncharacterized protein.
    
 0.660
rbbp5
Retinoblastoma binding protein 5.
    
 0.646
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.645
ENSSPAP00000023042
Si:ch73-335l21.4.
    
 0.629
ranbp2
RAN binding protein 2.
    
 0.626
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.625
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.