STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103375484Sosondowah ankyrin repeat domain family Cb. (433 aa)    
Predicted Functional Partners:
rhof
Ras homolog family member F.
   
  0.704
capzb
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
  0.661
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 0.643
mars1
Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.619
traf7
TNF receptor-associated factor 7.
    
 0.614
birc6
Baculoviral IAP repeat containing 6.
   
 0.613
ift81
Intraflagellar transport 81 homolog.
    
 0.612
ift88
Intraflagellar transport 88 homolog.
   
 0.602
ENSSPAP00000013113
Zinc finger and BTB domain containing 33.
    
 
 0.602
nkrf
NFKB repressing factor.
    
 
 0.602
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.