STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103374895EBF transcription factor 2. (591 aa)    
Predicted Functional Partners:
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.714
yod1
YOD1 deubiquitinase.
    
   0.700
plaa
Phospholipase A2-activating protein.
    
   0.700
LOC103355652
Cytochrome b5 reductase 4.
    
 0.526
LOC103357444
Valosin containing protein; Belongs to the AAA ATPase family.
    
 0.503
LOC103374416
Zgc:136908; Belongs to the AAA ATPase family.
    
 0.503
SPATA5
Spermatogenesis associated 5.
   
 0.497
spata5l1
Spermatogenesis associated 5-like 1.
   
 0.497
LOC103355141
Stearoyl-CoA desaturase b; Belongs to the fatty acid desaturase type 1 family.
    
 
 0.473
LOC103362465
Stearoyl-CoA desaturase; Belongs to the fatty acid desaturase type 1 family.
    
 
 0.473
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.