STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
josd1Josephin domain containing 1. (264 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
   
 0.904
UBB
Ubiquitin B.
   
 0.878
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.816
ENSSPAP00000000794
Ubiquitin-like domain-containing protein.
    
  0.786
ENSSPAP00000015708
Ubiquitin-like domain-containing protein.
    
  0.776
ENSSPAP00000015730
Ubiquitin-like domain-containing protein.
    
  0.776
LOC103358415
NEDD8 ubiquitin like modifier.
   
 0.708
ENSSPAP00000030779
Ubiquitin-like domain-containing protein.
   
 0.708
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.702
ENSSPAP00000000804
Ubiquitin-like domain-containing protein.
   
 0.702
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.