STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msx1Muscle segment homeobox 1a. (283 aa)    
Predicted Functional Partners:
LOC103361781
Muscle segment homeobox 2b.
  
0.932
LOC103369153
Homeobox domain-containing protein.
  
  
 
0.822
ENSSPAP00000000609
Paired box 9.
    
 
 0.615
LOC103359018
Paired box 1a.
    
 
 0.567
LOC103361533
Necdin-like 2.
    
 
 0.539
ttr
Transthyretin; Thyroid hormone-binding protein. Probably transports thyroxine from the bloodstream to the brain.
   
 
 0.527
csrnp1
Cysteine-serine-rich nuclear protein 1b.
      
 0.524
LOC103361279
Lymphoid enhancer-binding factor 1.
   
  
 0.521
snai2
Snail family zinc finger 2.
   
  
 0.519
LOC103372223
5-hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
     
 0.513
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.