STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103376067TNFAIP3 interacting protein 1. (658 aa)    
Predicted Functional Partners:
tnfaip3
Tumor necrosis factor, alpha-induced protein 3.
   
 0.976
LOC103365293
Tumor necrosis factor receptor superfamily, member 1a.
    
 
 0.917
UBB
Ubiquitin B.
    
   0.871
optn
Optineurin.
    
 0.846
ZRANB1
Zinc finger RANBP2-type containing 1.
    
 0.716
otud7b
OTU deubiquitinase 7B.
    
 0.716
zranb1
Zinc finger, RAN-binding domain containing 1a.
    
 0.716
otud7a
OTU deubiquitinase 7A.
    
 0.716
vcpip1
Valosin containing protein (p97)/p47 complex interacting protein 1.
    
 0.716
LOC103374020
Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
    
 0.709
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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