STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
taf1aTATA box binding protein (TBP)-associated factor, RNA polymerase I, A. (312 aa)    
Predicted Functional Partners:
taf1b
TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.
   
 0.989
LOC103353906
TATA box binding protein like 2.
    
 0.870
ENSSPAP00000007455
Uncharacterized protein.
    
 0.870
tbp
TATA box binding protein.
    
 0.870
ENSSPAP00000030471
Uncharacterized protein.
    
 0.870
rrn3
RRN3 homolog, RNA polymerase I transcription factor.
    
 0.849
taf1c
Wu:fj64h06.
    
 0.817
hint2
Histidine triad nucleotide binding protein 2.
    
 0.817
HINT1
Histidine triad nucleotide binding protein 1.
    
 0.817
polr1e
RNA polymerase I subunit E.
     
 0.813
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.