STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103368689Ubiquitin specific peptidase 31; Belongs to the peptidase C19 family. (1289 aa)    
Predicted Functional Partners:
UBB
Ubiquitin B.
    
 0.773
usp10
Ubiquitin carboxyl-terminal hydrolase.
    
0.748
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.719
rps27a
Ribosomal protein S27a.
    
 0.710
rnf123
Ring finger protein 123.
   
 0.699
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.673
rfc5
Replication factor C (activator 1) 5.
    
 0.653
LOC103361723
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.651
LOC103367507
TNF receptor-associated factor 6-like.
    
 0.651
rfc2
Replication factor C (activator 1) 2.
    
 0.642
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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