STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lonrf2Si:ch1073-440b2.1. (777 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
   
  0.809
UBB
Ubiquitin B.
    
 0.807
tp53bp1
Tumor protein p53 binding protein, 1.
    
 0.754
trip12
Thyroid hormone receptor interactor 12.
    
 0.718
bard1
BRCA1 associated RING domain 1.
    
 0.702
ENSSPAP00000000794
Ubiquitin-like domain-containing protein.
    
 0.695
brca1
Uncharacterized protein.
    
 0.695
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.695
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.684
ube2n
Ubiquitin-conjugating enzyme E2Na; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.683
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.