STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103354239RAB6B, member RAS oncogene family a. (208 aa)    
Predicted Functional Partners:
gdi1
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.915
gdi2
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.915
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.910
vps39
VPS39 subunit of HOPS complex.
    
 
 0.892
vps52
VPS52 subunit of GARP complex.
    
 0.856
vps53
VPS53 subunit of GARP complex.
    
 0.843
arl1
ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family.
   
 0.833
LOC103374927
Uncharacterized protein.
   
 0.831
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 0.829
ENSSPAP00000010786
GRIP domain-containing protein.
    
 0.828
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.