STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103372105Rab-GAP TBC domain-containing protein. (915 aa)    
Predicted Functional Partners:
ulk2
Unc-51 like autophagy activating kinase 2.
    
  0.674
ulk1
Unc-51 like autophagy activating kinase 1.
    
  0.674
LOC103353645
Unc-51 like autophagy activating kinase 1a.
    
  0.674
LOC103366835
Uncharacterized protein.
    
 0.650
LOC103362356
RAB11a, member RAS oncogene family, like.
    
 0.650
LOC103369191
Uncharacterized protein.
    
 0.650
LOC103370860
RAB11B, member RAS oncogene family, a.
    
 0.650
rab11a
RAB11A, member RAS oncogene family.
    
 0.650
rabl2b
RAB, member of RAS oncogene family-like 2.
    
 0.644
LOC103362358
RAB25, member RAS oncogene family b.
    
 0.644
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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