STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103362517Uncharacterized protein. (252 aa)    
Predicted Functional Partners:
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.829
rabep2
Rabaptin, RAB GTPase binding effector protein 2.
    
 0.829
rps27a
Ribosomal protein S27a.
    
 0.737
zfand4
Zinc finger, AN1-type domain 4.
    
 0.619
rab21
RAB21, member RAS oncogene family.
   
 
 0.609
RAB31
RAB31, member RAS oncogene family.
   
 0.587
rab24
RAB24, member RAS oncogene family.
   
 0.587
rab20
RAB20, member RAS oncogene family.
   
 0.587
rab5c
RAB5C, member RAS oncogene family.
   
 0.587
rab5a
RAB5A, member RAS oncogene family, b.
   
 0.587
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.