ercc6l protein (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ercc6l

Excision repair cross-complementation group 6-like. (1273 aa)

Predicted Functional Partners:

pcna

0.958

exo1

0.952

cenpi

0.926

rad18

0.921

actl6a

0.919

ruvbl1

0.918

mad2l1

0.909

cdc20

0.900

LOC103368048

0.898

LOC103359841

0.898

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103359841	LOC103368048	ENSSPAP00000029830	ENSSPAP00000022419	Helicase C-terminal domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.999
LOC103359841	ercc6l	ENSSPAP00000029830	ENSSPAP00000024436	Helicase C-terminal domain-containing protein.	Excision repair cross-complementation group 6-like.	0.898
LOC103359841	exo1	ENSSPAP00000029830	ENSSPAP00000022016	Helicase C-terminal domain-containing protein.	Exonuclease 1.	0.885
LOC103359841	pcna	ENSSPAP00000029830	ENSSPAP00000001748	Helicase C-terminal domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.982
LOC103359841	rad18	ENSSPAP00000029830	ENSSPAP00000009408	Helicase C-terminal domain-containing protein.	RAD18 E3 ubiquitin protein ligase.	0.957
LOC103368048	LOC103359841	ENSSPAP00000022419	ENSSPAP00000029830	Helicase ATP-binding domain-containing protein.	Helicase C-terminal domain-containing protein.	0.999
LOC103368048	ercc6l	ENSSPAP00000022419	ENSSPAP00000024436	Helicase ATP-binding domain-containing protein.	Excision repair cross-complementation group 6-like.	0.898
LOC103368048	exo1	ENSSPAP00000022419	ENSSPAP00000022016	Helicase ATP-binding domain-containing protein.	Exonuclease 1.	0.885
LOC103368048	pcna	ENSSPAP00000022419	ENSSPAP00000001748	Helicase ATP-binding domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.982
LOC103368048	rad18	ENSSPAP00000022419	ENSSPAP00000009408	Helicase ATP-binding domain-containing protein.	RAD18 E3 ubiquitin protein ligase.	0.957
actl6a	cdc20	ENSSPAP00000003414	ENSSPAP00000011951	Actin-like 6A; Belongs to the actin family.	Cell division cycle 20 homolog.	0.471
actl6a	cenpi	ENSSPAP00000003414	ENSSPAP00000011934	Actin-like 6A; Belongs to the actin family.	Centromere protein I.	0.659
actl6a	ercc6l	ENSSPAP00000003414	ENSSPAP00000024436	Actin-like 6A; Belongs to the actin family.	Excision repair cross-complementation group 6-like.	0.919
actl6a	mad2l1	ENSSPAP00000003414	ENSSPAP00000015120	Actin-like 6A; Belongs to the actin family.	MAD2 mitotic arrest deficient-like 1 (yeast).	0.512
actl6a	ruvbl1	ENSSPAP00000003414	ENSSPAP00000001663	Actin-like 6A; Belongs to the actin family.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.996
cdc20	actl6a	ENSSPAP00000011951	ENSSPAP00000003414	Cell division cycle 20 homolog.	Actin-like 6A; Belongs to the actin family.	0.471
cdc20	cenpi	ENSSPAP00000011951	ENSSPAP00000011934	Cell division cycle 20 homolog.	Centromere protein I.	0.869
cdc20	ercc6l	ENSSPAP00000011951	ENSSPAP00000024436	Cell division cycle 20 homolog.	Excision repair cross-complementation group 6-like.	0.900
cdc20	exo1	ENSSPAP00000011951	ENSSPAP00000022016	Cell division cycle 20 homolog.	Exonuclease 1.	0.778
cdc20	mad2l1	ENSSPAP00000011951	ENSSPAP00000015120	Cell division cycle 20 homolog.	MAD2 mitotic arrest deficient-like 1 (yeast).	0.998