STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TIMP3TIMP metallopeptidase inhibitor 3. (214 aa)    
Predicted Functional Partners:
mmp9
Matrix metallopeptidase 9.
   
 0.962
LOC103360542
ADAM metallopeptidase domain 17a.
    
 0.938
LOC103371395
ADAM metallopeptidase domain 17b.
    
 0.938
mmp13
Matrix metallopeptidase 13b.
   
 0.840
LOC103357224
Matrix metallopeptidase 20b (enamelysin).
   
 0.840
LOC103357223
Matrix metallopeptidase 20a (enamelysin).
   
 0.840
LOC103357222
ZnMc domain-containing protein.
   
 0.840
mmp2
Matrix metallopeptidase 2.
   
 0.840
LOC103370389
ZnMc domain-containing protein.
   
 0.840
LOC103370390
ZnMc domain-containing protein.
   
 0.840
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.