STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103371523RBR-type E3 ubiquitin transferase. (855 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.751
uevld
UEV and lactate/malate dehyrogenase domains.
   
 0.720
birc6
Baculoviral IAP repeat containing 6.
    
 0.709
LOC103371291
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.701
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.700
rnf216
Ring finger protein 216.
    
 0.693
ube2l3
Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.671
arih2
RBR-type E3 ubiquitin transferase.
    
0.638
LOC103362164
Uncharacterized protein.
    
0.632
rnf31
Uncharacterized protein.
    
0.632
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.