LOC103368113 protein (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103368113

Transmembrane protein 184bb. (417 aa)

Predicted Functional Partners:

gabarapl2

0.728

GABARAPL2

0.728

gabarap

0.728

dpy30

0.570

LOC103371831

0.542

LOC103358548

0.542

ube2i

0.542

MAP1LC3B

0.541

LOC103356239

0.541

map1lc3a

0.541

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GABARAPL2	LOC103368113	ENSSPAP00000021006	ENSSPAP00000026300	GABA type A receptor associated protein like 2.	Transmembrane protein 184bb.	0.728
GABARAPL2	MAP1LC3B	ENSSPAP00000021006	ENSSPAP00000009451	GABA type A receptor associated protein like 2.	Microtubule-associated protein 1 light chain 3 beta.	0.807
GABARAPL2	gabarap	ENSSPAP00000021006	ENSSPAP00000021811	GABA type A receptor associated protein like 2.	GABA(A) receptor-associated protein b.	0.870
GABARAPL2	map1lc3a	ENSSPAP00000021006	ENSSPAP00000023605	GABA type A receptor associated protein like 2.	Microtubule-associated protein 1 light chain 3 alpha.	0.804
LOC103356239	LOC103368113	ENSSPAP00000011448	ENSSPAP00000026300	Microtubule-associated protein 1 light chain 3 gamma, like.	Transmembrane protein 184bb.	0.541
LOC103356239	MAP1LC3B	ENSSPAP00000011448	ENSSPAP00000009451	Microtubule-associated protein 1 light chain 3 gamma, like.	Microtubule-associated protein 1 light chain 3 beta.	0.805
LOC103356239	map1lc3a	ENSSPAP00000011448	ENSSPAP00000023605	Microtubule-associated protein 1 light chain 3 gamma, like.	Microtubule-associated protein 1 light chain 3 alpha.	0.804
LOC103358548	LOC103368113	ENSSPAP00000017820	ENSSPAP00000026300	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Transmembrane protein 184bb.	0.542
LOC103358548	ube2i	ENSSPAP00000017820	ENSSPAP00000021849	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.898
LOC103368113	GABARAPL2	ENSSPAP00000026300	ENSSPAP00000021006	Transmembrane protein 184bb.	GABA type A receptor associated protein like 2.	0.728
LOC103368113	LOC103356239	ENSSPAP00000026300	ENSSPAP00000011448	Transmembrane protein 184bb.	Microtubule-associated protein 1 light chain 3 gamma, like.	0.541
LOC103368113	LOC103358548	ENSSPAP00000026300	ENSSPAP00000017820	Transmembrane protein 184bb.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.542
LOC103368113	LOC103371831	ENSSPAP00000026300	ENSSPAP00000010517	Transmembrane protein 184bb.	Potassium channel tetramerization domain containing 2.	0.542
LOC103368113	MAP1LC3B	ENSSPAP00000026300	ENSSPAP00000009451	Transmembrane protein 184bb.	Microtubule-associated protein 1 light chain 3 beta.	0.541
LOC103368113	dpy30	ENSSPAP00000026300	ENSSPAP00000002355	Transmembrane protein 184bb.	Dpy-30 histone methyltransferase complex regulatory subunit.	0.570
LOC103368113	gabarap	ENSSPAP00000026300	ENSSPAP00000021811	Transmembrane protein 184bb.	GABA(A) receptor-associated protein b.	0.728
LOC103368113	gabarapl2	ENSSPAP00000026300	ENSSPAP00000006430	Transmembrane protein 184bb.	GABA(A) receptor-associated protein like 2.	0.728
LOC103368113	map1lc3a	ENSSPAP00000026300	ENSSPAP00000023605	Transmembrane protein 184bb.	Microtubule-associated protein 1 light chain 3 alpha.	0.541
LOC103368113	ube2i	ENSSPAP00000026300	ENSSPAP00000021849	Transmembrane protein 184bb.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.542
LOC103371831	LOC103368113	ENSSPAP00000010517	ENSSPAP00000026300	Potassium channel tetramerization domain containing 2.	Transmembrane protein 184bb.	0.542