STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm42RNA binding motif protein 42. (406 aa)    
Predicted Functional Partners:
haus3
HAUS augmin-like complex, subunit 3.
   
 0.976
haus6
HAUS6_N domain-containing protein.
   
 0.974
haus8
Uncharacterized protein.
    
 0.971
haus1
HAUS augmin-like complex, subunit 1.
   
 0.969
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.967
ENSSPAP00000000329
Uncharacterized protein.
    
 0.966
haus2
Si:dkey-170l10.1.
    
 0.961
ENSSPAP00000004405
Small nuclear ribonucleoprotein polypeptide F.
    
 0.955
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
   
 0.949
usp39
Ubiquitin specific peptidase 39.
    
  0.946
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.