STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103373859Uncharacterized protein. (516 aa)    
Predicted Functional Partners:
UBB
Ubiquitin B.
    
  0.583
rps27a
Ribosomal protein S27a.
    
  0.580
ifih1
Interferon induced with helicase C domain 1.
    
  0.549
dhx58
DEXH (Asp-Glu-X-His) box polypeptide 58.
    
  0.549
LOC103357826
Caspase a; Belongs to the peptidase C14A family.
    
 0.530
pycard
PYD and CARD domain containing.
    
  0.528
zfand4
Zinc finger, AN1-type domain 4.
    
  0.516
tonsl
Tonsoku-like, DNA repair protein.
    
  0.501
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.499
gmps
Guanine monophosphate synthase.
    
  0.498
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.