STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppihPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)    
Predicted Functional Partners:
ENSSPAP00000015002
PRP4 pre-mRNA processing factor 4 homolog (yeast).
    
 0.998
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
   
 0.995
snu13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.992
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 0.992
ENSSPAP00000004405
Small nuclear ribonucleoprotein polypeptide F.
   
 0.986
rpp38
Ribonuclease P/MRP 38 subunit.
  
 0.954
ranbp1
RAN binding protein 1.
 
 
 0.949
lsm4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.947
wbp4
Uncharacterized protein.
    
 0.945
eftud2
Elongation factor Tu GTP binding domain containing 2.
  
 0.945
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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