STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103364251Insulin-like growth factor binding protein 5a. (267 aa)    
Predicted Functional Partners:
igf2
Insulin-like growth factor 2b.
   
 0.852
ENSSPAP00000022743
Insulin-like growth factor binding protein, acid labile subunit.
   
 0.848
pappa
Pregnancy-associated plasma protein A, pappalysin 1a.
    
 0.830
ENSSPAP00000029187
Uncharacterized protein.
   
 0.778
LOC103365080
Fam20C domain-containing protein.
    
  0.614
LOC103361753
FAM20C golgi associated secretory pathway kinase a.
    
  0.614
LOC103360306
Matrix metallopeptidase 14b (membrane-inserted).
    
 0.592
ptgs2
Prostaglandin-endoperoxide synthase 2b.
      
 0.579
bmp15
Bone morphogenetic protein 15.
      
 0.579
LOC103371241
Fam20C domain-containing protein.
    
  0.547
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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