l1cam protein (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

l1cam

L1 cell adhesion molecule, paralog a. (1284 aa)

Predicted Functional Partners:

cntn2

0.945

ncam2

0.920

ENSSPAP00000027659

0.920

LOC103356478

0.920

LOC103361540

0.900

LOC103355352

0.856

nrp1

0.759

LOC103372191

0.753

LOC103369070

0.753

ptprg

0.753

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000027659	LOC103361540	ENSSPAP00000027659	ENSSPAP00000028000	Uncharacterized protein.	Uncharacterized protein.	0.920
ENSSPAP00000027659	cntn2	ENSSPAP00000027659	ENSSPAP00000025464	Uncharacterized protein.	Contactin 2.	0.714
ENSSPAP00000027659	l1cam	ENSSPAP00000027659	ENSSPAP00000027779	Uncharacterized protein.	L1 cell adhesion molecule, paralog a.	0.920
LOC103355352	LOC103356478	ENSSPAP00000024775	ENSSPAP00000028410	Neural cell adhesion molecule 1a.	Neural cell adhesion molecule 1b.	0.831
LOC103355352	LOC103361540	ENSSPAP00000024775	ENSSPAP00000028000	Neural cell adhesion molecule 1a.	Uncharacterized protein.	0.856
LOC103355352	cntn2	ENSSPAP00000024775	ENSSPAP00000025464	Neural cell adhesion molecule 1a.	Contactin 2.	0.714
LOC103355352	l1cam	ENSSPAP00000024775	ENSSPAP00000027779	Neural cell adhesion molecule 1a.	L1 cell adhesion molecule, paralog a.	0.856
LOC103356478	LOC103355352	ENSSPAP00000028410	ENSSPAP00000024775	Neural cell adhesion molecule 1b.	Neural cell adhesion molecule 1a.	0.831
LOC103356478	LOC103361540	ENSSPAP00000028410	ENSSPAP00000028000	Neural cell adhesion molecule 1b.	Uncharacterized protein.	0.920
LOC103356478	cntn2	ENSSPAP00000028410	ENSSPAP00000025464	Neural cell adhesion molecule 1b.	Contactin 2.	0.714
LOC103356478	l1cam	ENSSPAP00000028410	ENSSPAP00000027779	Neural cell adhesion molecule 1b.	L1 cell adhesion molecule, paralog a.	0.920
LOC103361540	ENSSPAP00000027659	ENSSPAP00000028000	ENSSPAP00000027659	Uncharacterized protein.	Uncharacterized protein.	0.920
LOC103361540	LOC103355352	ENSSPAP00000028000	ENSSPAP00000024775	Uncharacterized protein.	Neural cell adhesion molecule 1a.	0.856
LOC103361540	LOC103356478	ENSSPAP00000028000	ENSSPAP00000028410	Uncharacterized protein.	Neural cell adhesion molecule 1b.	0.920
LOC103361540	LOC103369070	ENSSPAP00000028000	ENSSPAP00000012218	Uncharacterized protein.	Protein tyrosine phosphatase receptor type Z1b.	0.753
LOC103361540	LOC103372191	ENSSPAP00000028000	ENSSPAP00000001097	Uncharacterized protein.	Uncharacterized protein.	0.753
LOC103361540	cntn2	ENSSPAP00000028000	ENSSPAP00000025464	Uncharacterized protein.	Contactin 2.	0.945
LOC103361540	l1cam	ENSSPAP00000028000	ENSSPAP00000027779	Uncharacterized protein.	L1 cell adhesion molecule, paralog a.	0.900
LOC103361540	ncam2	ENSSPAP00000028000	ENSSPAP00000015399	Uncharacterized protein.	Zgc:152904.	0.920
LOC103361540	nrp1	ENSSPAP00000028000	ENSSPAP00000021046	Uncharacterized protein.	Neuropilin; Belongs to the neuropilin family.	0.759