STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM38RNA binding motif protein 38. (244 aa)    
Predicted Functional Partners:
LOC103360160
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
  
 
 0.769
LOC103354120
RNA binding fox-1 homolog 2.
  
 
 0.699
LOC103359285
RRM domain-containing protein.
  
 
 0.691
rbfox1
RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events.
  
 
 0.682
LOC103369104
ELAV-like protein; Belongs to the RRM elav family.
  
 
 
 0.598
elavl1
ELAV-like protein; Belongs to the RRM elav family.
  
 
 
 0.598
elavl3
ELAV-like protein; Belongs to the RRM elav family.
  
 
 
 0.574
ELAVL2
ELAV-like protein; Belongs to the RRM elav family.
  
 
 
 0.573
LOC103367586
ELAV-like protein; Belongs to the RRM elav family.
  
 
 
 0.571
sf3b1
Splicing factor 3b, subunit 1.
     
 0.532
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.