STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103354893Rab-GAP TBC domain-containing protein. (735 aa)    
Predicted Functional Partners:
ENSSPAP00000002516
Uncharacterized protein.
    
 0.648
LOC103363946
Si:dkey-16l2.16.
    
 0.648
rab35
RAB35, member RAS oncogene family b.
    
 0.648
ift27
Intraflagellar transport 27 homolog (Chlamydomonas).
    
 0.592
ARF6
ADP ribosylation factor 6.
    
 
 0.511
ENSSPAP00000014533
Uncharacterized protein.
    
 
 0.511
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
      
 0.465
arl15
ADP-ribosylation factor-like 15a.
    
 
 0.432
TBC1D13
TBC1 domain family member 13.
      
 0.418
tbc1d10b
TBC1 domain family, member 10b.
     
0.409
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.