LOC103354920 protein (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103354920

UBIQUITIN_CONJUGAT_2 domain-containing protein. (151 aa)

Predicted Functional Partners:

trip12

0.955

LOC103368048

0.888

LOC103359841

0.888

ube2v1

0.845

ENSSPAP00000020655

0.845

LOC103370812

0.829

uba1

0.825

LOC103360413

0.825

uba6

0.825

rps27a

0.821

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000020655	LOC103354920	ENSSPAP00000020655	ENSSPAP00000029427	Ubiquitin-conjugating enzyme E2 variant 2.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.845
ENSSPAP00000020655	LOC103359841	ENSSPAP00000020655	ENSSPAP00000029830	Ubiquitin-conjugating enzyme E2 variant 2.	Helicase C-terminal domain-containing protein.	0.719
ENSSPAP00000020655	LOC103360413	ENSSPAP00000020655	ENSSPAP00000026212	Ubiquitin-conjugating enzyme E2 variant 2.	Ubiquitin-like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.	0.691
ENSSPAP00000020655	LOC103368048	ENSSPAP00000020655	ENSSPAP00000022419	Ubiquitin-conjugating enzyme E2 variant 2.	Helicase ATP-binding domain-containing protein.	0.719
ENSSPAP00000020655	rps27a	ENSSPAP00000020655	ENSSPAP00000030287	Ubiquitin-conjugating enzyme E2 variant 2.	Ribosomal protein S27a.	0.970
ENSSPAP00000020655	trip12	ENSSPAP00000020655	ENSSPAP00000015155	Ubiquitin-conjugating enzyme E2 variant 2.	Thyroid hormone receptor interactor 12.	0.565
ENSSPAP00000020655	uba1	ENSSPAP00000020655	ENSSPAP00000005618	Ubiquitin-conjugating enzyme E2 variant 2.	Ubiquitin-like modifier activating enzyme 1; Belongs to the ubiquitin-activating E1 family.	0.691
ENSSPAP00000020655	uba6	ENSSPAP00000020655	ENSSPAP00000028058	Ubiquitin-conjugating enzyme E2 variant 2.	Ubiquitin like modifier activating enzyme 6.	0.691
LOC103354920	ENSSPAP00000020655	ENSSPAP00000029427	ENSSPAP00000020655	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 variant 2.	0.845
LOC103354920	LOC103359841	ENSSPAP00000029427	ENSSPAP00000029830	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Helicase C-terminal domain-containing protein.	0.888
LOC103354920	LOC103360413	ENSSPAP00000029427	ENSSPAP00000026212	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.	0.825
LOC103354920	LOC103368048	ENSSPAP00000029427	ENSSPAP00000022419	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.888
LOC103354920	LOC103370812	ENSSPAP00000029427	ENSSPAP00000024418	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.829
LOC103354920	rps27a	ENSSPAP00000029427	ENSSPAP00000030287	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ribosomal protein S27a.	0.821
LOC103354920	trip12	ENSSPAP00000029427	ENSSPAP00000015155	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Thyroid hormone receptor interactor 12.	0.955
LOC103354920	uba1	ENSSPAP00000029427	ENSSPAP00000005618	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like modifier activating enzyme 1; Belongs to the ubiquitin-activating E1 family.	0.825
LOC103354920	uba6	ENSSPAP00000029427	ENSSPAP00000028058	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin like modifier activating enzyme 6.	0.825
LOC103354920	ube2v1	ENSSPAP00000029427	ENSSPAP00000018620	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 variant 1.	0.845
LOC103359841	ENSSPAP00000020655	ENSSPAP00000029830	ENSSPAP00000020655	Helicase C-terminal domain-containing protein.	Ubiquitin-conjugating enzyme E2 variant 2.	0.719
LOC103359841	LOC103354920	ENSSPAP00000029830	ENSSPAP00000029427	Helicase C-terminal domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.888