STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
svipSi:ch73-147o17.1. (89 aa)    
Predicted Functional Partners:
LOC103357444
Valosin containing protein; Belongs to the AAA ATPase family.
    
 0.959
LOC103374416
Zgc:136908; Belongs to the AAA ATPase family.
    
 0.959
ubxn2a
UBX domain protein 2A.
     
 0.949
ubxn6
UBX domain protein 6.
    
 0.919
SPATA5
Spermatogenesis associated 5.
    
 0.904
spata5l1
Spermatogenesis associated 5-like 1.
    
 0.904
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 0.888
LOC103356237
UBA domain-containing protein.
     
 0.887
LOC103374193
UBX domain protein 1.
     
 0.887
faap100
Si:dkey-57h18.1.
    
 0.879
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.