STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmf1TATA element modulatory factor 1. (1153 aa)    
Predicted Functional Partners:
gcc1
GRIP and coiled-coil domain containing 1.
     
 0.791
LOC103363273
Uncharacterized protein.
    
 0.778
rab41
RAB41, member RAS oncogene family.
    
 0.778
LOC103360106
RAB6B, member RAS oncogene family.
    
 0.778
LOC103354239
RAB6B, member RAS oncogene family a.
    
 0.778
LOC103373389
RAB34, member RAS oncogene family b.
    
 0.762
rab34
RAB34, member RAS oncogene family a.
    
 0.762
LOC103370801
RAB36, member RAS oncogene family.
    
 0.762
vps52
VPS52 subunit of GARP complex.
     
 0.756
vps54
VPS54 subunit of GARP complex.
   
 
 0.751
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.