STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103365993LSM14A mRNA processing body assembly factor a. (438 aa)    
Predicted Functional Partners:
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
   
 
 0.935
ENSSPAP00000019704
Decapping mRNA 2.
    
 
 0.897
LOC103373921
DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.
   
 
 0.872
LOC103360126
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.872
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.872
dcp1a
Decapping mRNA 1A.
    
 
 0.775
ENSSPAP00000011494
Uncharacterized protein.
    
 
 0.769
LOC103375937
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
    
 
 0.755
edc3
Enhancer of mRNA decapping 3.
    
 
 0.755
edc4
Enhancer of mRNA decapping 4.
    
 
 0.670
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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