STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103360389Matrin-type domain-containing protein. (1801 aa)    
Predicted Functional Partners:
ENSSPAP00000006493
Uncharacterized protein.
   
  0.833
LOC103361657
Nipped-B protein.
   
  0.833
LOC103362938
Nipped-B protein.
   
  0.833
senp6
ULP_PROTEASE domain-containing protein.
   
   0.818
LOC103353302
Zgc:163098.
   
    0.778
u2surp
U2 snRNP-associated SURP domain containing.
   
    0.778
zfc3h1
Uncharacterized protein.
   
   0.767
sf3b1
Splicing factor 3b, subunit 1.
   
    0.755
pcm1
Pericentriolar material 1.
  
   0.748
arid4a
AT rich interactive domain 4A (RBP1-like).
   
 0.694
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.