STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox4Transcription factor SOX. (360 aa)    
Predicted Functional Partners:
LOC103364726
Transcription factor 7.
    
 0.710
LOC103361279
Lymphoid enhancer-binding factor 1.
    
0.699
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.676
LOC103374273
POU domain protein.
    
 0.649
LOC103359554
Uncharacterized protein.
    
 0.629
LOC103362533
Junction plakoglobin a.
    
 0.629
LOC103371495
Uncharacterized protein.
    
 0.629
ENSSPAP00000001266
HMG box domain-containing protein.
    
0.605
ENSSPAP00000016624
HMG box domain-containing protein.
    
0.605
ENSSPAP00000025069
Transcription factor 7 like 2.
    
0.605
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.